@article {60254, title = {A contribution towards checklist of fungus gnats (Diptera, Diadocidiidae, Ditomyiidae, Bolitophilidae, Keroplatidae, Mycetophilidae) in Georgia, Transcaucasia}, journal = {ZooKeys}, volume = {1026}, year = {2021}, month = {Feb-03-2023}, pages = {69 - 142}, abstract = {

The fungus gnats of Georgia are studied based on 2682 specimens collected from 57 localities during 2011\–2019. Altogether, 245 species are recorded including four species of Bolitophilidae, three species of Diadocidiidae, two species of Ditomyiidae, 34 species of Keroplatidae and 202 species of Mycetophilidae. 230 and 188 species are recorded from Georgia and the whole of Transcaucasia for the first time, respectively. Three new species \– Sciophila georgei sp. nov., Leia katae sp. nov. and Anatella metae sp. nov. \– are described including detailed illustrations of the male terminalia. Photographs are provided for an additional 38 species to highlight a variability of their general facies. Combined with earlier published data, the number of fungus gnat species in Georgia is set at 246. The estimated diversity of fungus gnats in Georgia is calculated using non-parametric methods and discussed with respect to other Western Palaearctic regions.

}, issn = {1313-2989}, doi = {10.3897/zookeys.1026.63749}, url = {https://zookeys.pensoft.net/article/63749/}, author = {Kurina, Olavi} } @article {60244, title = {Four new Neotropical species of Eudicrana Loew (Diptera, Mycetophilidae, Sciophilinae) from the Colombian high Andean ecosystems, with comments on the genus}, journal = {ZooKeys}, volume = {988}, year = {2020}, month = {Jun-11-2020}, pages = {129 - 150}, abstract = {

Four new species of the sciophiline genus Eudicrana Loew are described for the Eastern and Central Andes of Colombia\–Eudicrana silvaandina sp. nov., E. chingaza sp. nov., E. maculata sp. nov. and E. merizaldei. These are the first species of Eudicrana described from the extreme northern range of the Andes. The altitudinal distribution of these species in the paramos and high Andean forest ecosystems is restricted to 1750\–3660 m a.s.l. and some other information on the environment is briefly discussed. A key for the Colombian species of Eudicrana is provided and a discussion is elaborated on the position of these species within the genus.

}, issn = {1313-2989}, doi = {10.3897/zookeys.988.49627}, url = {https://zookeys.pensoft.net/article/49627}, author = {Henao-Sep{\'u}lveda, Carolina and Wolff, Marta and de Souza Amorim, Dalton} } @article {59947, title = {New faunistic records of the family Mycetophilidae (Insecta, Diptera) from Morocco}, journal = {ZooKeys}, volume = {934}, year = {2020}, pages = {93-110}, doi = {10.3897/zookeys.934.49157}, url = {https://zookeys.pensoft.net/article/49157}, author = {Banamar, Ouarda and Chandler, Peter J. and Driauach, Ouafaa and Belqat, Bouta{\"\i}na and Banamar, Ouarda and Chandler, Peter J. and Driauach, Ouafaa and Belqat, Bouta{\"\i}na} } @article {57304, title = {Revision of the Neotropical Neuratelia Rondani (Diptera, Mycetophilidae, Sciophilinae): two new species, a new combination, and a new synonym}, journal = {ZooKeys}, volume = {861}, year = {2019}, month = {Aug-07-2019}, pages = {63 - 79}, abstract = {

We describe two new Neotropical species of Neuratelia Rondani from the high Central Andes of Colombia, N. altoandina sp. nov. and N. colombiana sp. nov. The holotype of Eudicrana elegans Lane actually is
a species of Neuratelia and a new combination is proposed. Our examination of the holotype of Neuratelia sapaici Lane from southeastern Brazil shows this species to be a synonym of N. elegans (Lane), which is
formally proposed here. Neuratelia sapaici is redescribed. The position of these three species within the genus is discussed. A key for the Neotropical species of Neuratelia is provided.

}, issn = {1313-2989}, doi = {10.3897/zookeys.861.32835}, url = {https://zookeys.pensoft.net/article/32835}, author = {Henao-Sep{\'u}lveda, Carolina and Wolff, Marta and Amorim, Dalton De Souza} } @article {57293, title = {Allodia Winnertz from the Himalayas, with nine species new to science (Diptera, Mycetophilidae)}, journal = {ZooKeys}, volume = {820}, year = {2019}, month = {January-29-2019}, pages = {119 - 138}, abstract = {

An extensive collection of fungus gnats from Nepal and Bhutan, deposited at Kyushu University Museum in Japan, has been examined and revealed nine species of Allodia Winnertz, 1864 new to science: Allodia caligata Magnussen, sp. n., A. dibolia Magnussen, sp. n., A. shimai Magnussen, sp. n., A. spathulata Magnussen, sp. n., A. horologia Magnussen, sp. n., A. himalayensis Magnussen, sp. n., A. nepalensis Magnussen, sp. n., A. thudamensis Magnussen, sp. n., and A. scalprata Magnussen, sp. n. All specimens were collected at high altitudes in the central and eastern Himalayas. The species all belong to the subgenus Allodia s. str. and constitute the first records of the genus Allodia in Nepal and Bhutan. Brevicornu nigrofasciatum (Brunetti, 1912) comb. n., originally described from northern India, is transferred from Allodia based on the original description. A key for the identification of the new species is provided.

}, issn = {1313-2989}, doi = {10.3897/zookeys.820.31618}, url = {https://zookeys.pensoft.net/article/31618}, author = {Magnussen, Trude and S{\o}li, Geir E. E. and Kj{\ae}randsen, Jostein} } @article {56890, title = {New species and new records of Manota Williston from Colombia, Brazilian Amazonia, and Costa Rica (Diptera, Mycetophilidae)}, journal = {ZooKeys}, volume = {668}, year = {2017}, month = {13/04/2017}, pages = {83 - 105}, abstract = {

The following\  five species are described as new: Manota clava sp. n. (Colombia), Manota multilobata sp. n. (Colombia), Manota perplexa sp. n. (Costa Rica), Manota setilobata sp. n. (Colombia) and Manota subaristata sp. n. (Colombia). In addition, new records for the following 11 species are presented: Manota acuminata Jaschhof \& Hippa, 2005 (Costa Rica), Manota arenalensis Jaschhof \& Hippa, 2005 (Costa Rica), Manota corcovado Jaschhof \& Hippa, 2005 (Costa Rica), Manota costaricensis Jaschhof \& Hippa, 2005 (Costa Rica), Manota diversiseta Jaschhof \& Hippa, 2005 (Colombia, Brazilian Amazonia, Costa Rica), Manota minutula Hippa, Kurina \& Sääksjärvi, 2017 (Brazilian Amazonia), Manota multisetosa Jaschhof \& Hippa, 2005 (Costa Rica), Manota parva Jaschhof \& Hippa, 2005 (Colombia, Costa Rica), Manota pisinna Hippa \& Kurina, 2013 (Brazilian Amazonia), Manota spinosa Jaschhof \& Hippa, 2005 (Colombia) and Manota squamulata Jaschhof \& Hippa, 2005 (Costa Rica). Distribution patterns include (1) species known only locally in Costa Rica or Colombia, (2) distributions connecting Central America to west Andes lowlands, and (3) north-west Neotropical components, extending from Central America to Brazilian Amazonia.\  The possible biogeographical and taxonomical context of Manota species with a widespread distribution is considered.

}, issn = {1313-2989}, doi = {10.3897/zookeys.668.11350}, url = {http://zookeys.pensoft.net/articles.php?id=11350}, author = {Kurina, Olavi and Hippa, Heikki and Amorim, Dalton De Souza} } @article {56166, title = {A new species of Docosia Winnertz from Central Europe, with DNA barcoding based on four gene markers (Diptera, Mycetophilidae)}, journal = {ZooKeys}, volume = {549}, year = {2016}, month = {05/01/2016}, pages = {127-143}, abstract = {

A new species of Docosia Winnertz, D. dentata sp. n., is described and illustrated, based on a single male specimen collected in Mur\ánska planina National Park in Central Slovakia. DNA sequences (COI, COII, CytB, and ITS2) are included and compared for 13 species of Docosia. There was found only little congruence between the molecular results and previous scarce data about interspecific relationships based on morphology. The COI and CytB gene markers showed the highest interspecific gene distances while ITS2 showed the lowest ones. An updated key to the 23 Central European species of Docosia is also presented.

}, isbn = {1313-29891313-2970}, doi = {10.3897/zookeys.549.6925}, url = {http://dx.doi.org/10.3897/zookeys.549.6925}, author = {Jan {\v S}ev{\v c}{\'\i}k and David Kasp{\v r}{\'a}k and Rulik, Bj{\"o}rn} } @article {55290, title = {A new case of an Holarctic element in the Colombian Andes: first record of Cordyla Meigen (Diptera, Mycetophilidae) from the Neotropical region}, journal = {ZooKeys}, volume = {520}, year = {2015}, month = {Apr-09-2016}, pages = {87 - 108}, issn = {1313-2989}, doi = {10.3897/zookeys.520.6142}, url = {http://zookeys.pensoft.net/articles.php?id=6142}, author = {Kurina, Olavi and Oliveira, Sarah} } @article {55247, title = {The Mycetophila ruficollis Meigen (Diptera, Mycetophilidae) group in Europe: elucidating species delimitation with COI and ITS2 sequence data}, journal = {ZooKeys}, volume = {508}, year = {2015}, month = {06/2015}, pages = {51}, chapter = {15}, abstract = {

European species of the Mycetophila ruficollis group are compared on the basis of morphology and sequences
of mitochondrial cytochrome oxidase subunit one (COI) and the ITS2 region of nuclear ribosomal
DNA. The study represents the first evaluation of morphology-based species delimitation of closely
related fungus gnat species by applying molecular information. Detailed descriptions and illustrations
of the male terminalia are presented along with a key for the identification of all nine European species
of the group. Phylogenetic analyses of molecular data generally supported the morphological species
discrimination. The barcoding region of COI superseded ITS2 rDNA in resolving species. In the COI
barcoding region interspecific differences ranged from 2.9 to 10.6\% and the intraspecific distance from
0.08 to 0.8\%. Only COI data distinguished between the similar and closely related M. ichneumonea and
M. uninotata of which the latter was observed to include cryptic species. The host range of some species is
suggested to be narrower than previously considered and to depend on the forest type. Presented evidence
indicates the importance of analysing sequence data of morphologically very similar mycetophages reared
from identified host fungi for elucidating species delimitation as well as their geographic and host ranges.
New country records, viz. Estonia for M. evanida, Georgia for M. ichneumonea, M. idonea and M. ruficollis,
and Norway for M. strobli, widen the known distribution ranges of these species.

}, keywords = {DNA barcoding, fungus gnats, morphology, mycetophages, Mycetophilini, phylogenetic analysis, Taxonomy}, issn = {1313-2970 }, doi = {doi: 10.3897/zookeys.508.9814}, url = {http://zookeys.pensoft.net/browse_journal_issue_documents.php?issue_id=-1}, author = {Siiri J{\"u}rgenstein and Olavi Kurina and Kadri P{\~o}ldmaa} } @article {55226, title = {Two new Neuratelia Rondani (Diptera, Mycetophilidae) species from Western Palaearctic: a case of limited congruence between morphology and DNA sequence data}, journal = {ZooKeys}, volume = {496}, year = {2015}, month = {16.04.}, pages = {129}, chapter = {105}, abstract = {

Two new Mycetophilidae species, Neuratelia jabalmoussae sp. n. and Neuratelia salmelai sp. n. are described
on the basis of material collected from Lebanon, Estonia and Finland. Detailed figures of male
terminalia and photographs of general facies are provided along with discussions of their morphological
distinction from sibling species. For the first time molecular characters are used to distinguish new fungus
gnat species. Molecular analysis relies on cytochrome oxidase subunit one (COI) but has additionally been
corroborated by information from the 28S and ITS2 regions of nuclear ribosomal DNA. Situations where
morphological and molecular data provide conflicting evidence for species delimitation are discussed. A
new country record from Georgia is provided for Neuratelia caucasica.

}, doi = {doi: 10.3897/zookeys.496.9315}, url = {http://zookeys.pensoft.net/articles.php?id=5115}, author = {Kurina, Olavi and {\~O}unap, Erki and P{\~o}ldmaa, Kadri} } @article {51833, title = {Checklist of the fungus gnats of Finland: Bolitophilidae,~Diadocidiidae, Ditomyiidae, Keroplatidae~and~Mycetophilidae (Diptera)}, journal = {ZooKeys}, volume = {441}, year = {2014}, month = {Jul-09-2015}, pages = {119 - 149}, abstract = {

A checklist of the \’fungus gnat\’ group of families in Sciaroidea: Bolitophilidae, Diadocidiidae, Ditomyiidae, Keroplatidae and Mycetophilidae (Diptera) recorded from Finland. At present, the known Finnish fauna comprises 767 recognized species in 78 genera; 21 species of the family Bolitophilidae, 5 of the family Diadocidiidae, 2 of the family Ditomyiidae, 47 of the family Keroplatidae and 692 of the family Mycetophilidae. The unassigned genus Sciarosoma Chandler, 2002 is not included in this paper because it is listed with Sciaridae.

The most relevant synonyms, on which species were ever listed from Finland in Hackman (1980) and subsequent authors are indicated in the checklist. Eighteen species names of wrong records were removed.

}, issn = {1313-2989}, doi = {10.3897/zookeys.441.7646}, url = {http://zookeys.pensoft.net/articles.php?id=4045}, author = {Jakovlev, Jevgeni} } @article {51756, title = {The sequoia-loving sprite, a new genus and species of fungus gnat (Diptera, Mycetophilidae) from California}, journal = {ZooKeys}, volume = {437}, year = {2014}, month = {27-08-2014}, pages = {109 - 126}, abstract = {

California is one of the most biologically diverse regions of the world, yet the diversity of fungus gnats (Mycetophilidae) remains largely undocumented within the state. A modest survey of these flies has led to the discovery of a new genus and species of gnat that lives alongside one of the most iconic trees in the world, the giant sequoia (Sequoiadendron giganteum). Spritella sequoiaphila gen. et sp. n.is described and illustrated and its status among other mycetophilid genera is analyzed and discussed.

}, issn = {1313-2989}, doi = {10.3897/zookeys.437.793210.3897/zookeys.437.7932.app}, url = {http://www.pensoft.net/journals/zookeys/article/7932/abstract/the-sequoia-loving-sprite-a-new-genus-and-species-of-fungus-gnat-diptera-mycetophilidae-from-californiahttp://www.pensoft.net/journals/zookeys/article/7932/supp/25179}, author = {Kerr, Peter} } @article {51723, title = {Diversity of Manota Williston (Diptera, Mycetophilidae) in Ulu Temburong National Park, Brunei}, journal = {ZooKeys}, volume = {428}, year = {2014}, pages = {57{\textendash}77}, abstract = {

A total of 15 species of Manota Williston, 1896 are recorded from Brunei, based on the investigations in 2013-2014. Thirteen species are recorded from Ulu Temburong National Park and three species from the Universiti Brunei Darussalam Campus in Tungku. Six species are described as new to science: Manota belalongensis sp. n., M. kaspraki sp. n., M. macrothrix sp. n., M. megachaeta sp. n. and M. pileata sp. n. from Ulu Temburong, and M. ricina sp. n. from Tungku. New records of the following species are given: Manota bifida Hippa \& Papp, M. bruneiensis Hippa \& \Šev{\v c}\ík, M. hyboloma Hippa \& \Šev{\v c}\ík, M. oligochaeta Hippa, M. pappi Hippa, M. perangulata Hippa \& \Šev{\v c}\ík, M. pollex Hippa, M. procera Hippa and M. simplex Hippa.

}, doi = {http://dx.doi.org/10.3897/zookeys.428.7912}, author = {Jan {\v S}ev{\v c}{\'\i}k and Hippa, Heikki and Rodzay Abdul Wahab} } @article {50917, title = {The first Cordyla Meigen species (Diptera, Mycetophilidae) from continental Australia and Tasmania}, journal = {ZooKeys}, volume = {342}, year = {2013}, month = {10/2013}, chapter = {29-43}, abstract = {

A new species of Mycetophilidae, Cordyla australica sp. n., is described from continental Australia and
Tasmania, representing the first Cordyla record in the region. A detailed description of its morphology
with illustrations of male and female terminalia and a map of the collecting localities are provided. According
to the structure of male terminalia, C. australica sp. n. belongs to the C. murina species-group
that has 13 species worldwide. Within the group C. australica sp. n. resembles C. murina but has a unique
outline of the hypoproct and medial branch of the gonostylus. The observed distributional pattern is
restricted to the rainforest of eastern Australia and Tasmania.

}, keywords = {Australia, Cordyla, Diptera, Mycetophilidae, new species, Tasmania}, issn = {1313-2970}, doi = {10.3897/zookeys.342.6045}, url = {http://www.pensoft.net/journals/zookeys/issue/342/}, author = {Kurina, Olavi and Oliveira, Sarah Siqueira} } @article {10.3897/zookeys.269.4252, title = {Review of the Palaearctic Acomopterella Zaitzev (Diptera, Sciaroidea, Mycetophilidae)}, journal = {ZooKeys}, volume = {269}, year = {2013}, month = {02}, pages = {11{\textendash}32}, publisher = {Pensoft Publishers}, abstract = {

The distribution of Acomopterella species in the Palaearctic region has been re-examined in this study, using recently collected material. The European species was found to be distributed in the eastern Palaearctic as well. A second Palaearctic species from Honshu (Japan) is herein described. The morphology of adult specimens was studied by light microscopy and scanning electron microscopy. The shape of functional specialized setae on mid tibiae in Acomopterella and seven further fungus gnat genera is described and the suitability of this character for systematic studies is discussed. Details of a \“hind tibial organ\” are described.The position of Acomopterella in the tribe Gnoristini is briefly discussed. Acomopterella is found to be more closely related to Speolepta Edwards, 1925, than to any other recent genus.

}, doi = {10.3897/zookeys.269.4252}, url = {http://dx.doi.org/10.3897/zookeys.269.4252}, author = {Kallweit, Uwe} } @article {blagoderov_no_2012, title = {No specimen left behind: industrial scale digitization of natural history collections}, journal = {ZooKeys}, volume = {209}, year = {2012}, pages = {133{\textendash}146}, issn = {1313-2970, 1313-2989}, doi = {10.3897/zookeys.209.3178}, url = {http://www.pensoft.net/journals/zookeys/article/3178/abstract/no-specimen-left-behind-industrial-scale-digitization-of-natural-history-collections}, author = {Vladimir A. Blagoderov and Kitching, Ian and Livermore, Laurence and Simonsen, Thomas and Smith, Vincent} } @article {10.3897/zookeys.175.2388, title = {Katatopygia gen. n., a monophyletic branch segregated from Boletina (Diptera, Mycetophilidae)}, journal = {ZooKeys}, volume = {175}, year = {2012}, month = {03/2012}, pages = {37{\textendash}67}, publisher = {Pensoft Publishers}, abstract = {The genus Katatopygia gen. n. is proposed for the Boletina erythropyga/punctus-group that was first introduced by Garrett (1924, 1925) and currently comprises eight described species. Molecular studies have strongly indicated that this group forms a monophyletic sister-group to a clade consisting of all other Boletina, Coelosia and Gnoriste, and its monophyly is supported by morphological data as well. The new genus includes the following species: Katatopygia antoma (Garrett, 1924), comb. n., Katatopygia antica (Garrett, 1924), comb. n., Katatopygia erythropyga (Holmgren, 1883), comb. n., Katatopygia hissarica (Zaitzev \& Polevoi, 2002), comb. n., Katatopygia magna (Garrett, 1925), comb. n., Katatopygia laticauda (Saigusa, 1968), comb. n., Katatopygia neoerythropyga (Zaitzev \& Polevoi, 2002), comb. n. and Katatopygia sahlbergi (Lundstr{\"o}m, 1906), comb. n., all transferred from Boletina. K. sahlbergi is found to be a senior synonym of Boletina punctus Garrett, 1925, syn. n. A phylogeny based on morphological data and using parsimony analysis yielded four most parsimonious trees where the new genus is retrieved as monophyletic with high support. Katatopygia neoerythropyga is found to be the sister-taxon to all other species that form two clades, one with K. sahlbergi-like species and one with K. erythropyga-like species. A key to males of Katatopygia is provided. }, keywords = {Gnoristinae, identification key, new genus, new synonymy, phylogeny, revision, Taxonomy}, doi = {10.3897/zookeys.175.2388}, url = {http://dx.doi.org/10.3897/zookeys.175.2388}, author = {Martinsson, Svante and Kj{\ae}randsen, Jostein} } @article {10.3897/zookeys.150.2193, title = {Scratchpads 2.0: a Virtual Research Environment supporting scholarly collaboration, communication and data publication in biodiversity science}, journal = {ZooKeys}, volume = {150}, year = {2011}, month = {28/11/2011}, pages = {53{\textendash}70}, publisher = {Pensoft Publishers}, abstract = {

The Scratchpad Virtual Research Environment (http://scratchpads.eu/) is a flexible system for people to create their own research networks supporting natural history science. Here we describe Version 2 of the system characterised by the move to Drupal 7 as the Scratchpad core development framework and timed to coincide with the fifth year of the project\’s operation in late January 2012. The development of Scratchpad 2 reflects a combination of technical enhancements that make the project more sustainable, combined with new features intended to make the system more functional and easier to use. A roadmap outlining strategic plans for development of the Scratchpad project over the next two years concludes this article.

}, keywords = {biodiversity, database, e-infrastructure, Taxonomy, Virtual Research Environment}, doi = {10.3897/zookeys.150.2193}, url = {http://dx.doi.org/10.3897/zookeys.150.2193}, author = {Smith, Vincent and Rycroft, Simon and Brake, Irina and Scott, Ben and Baker, Ed and Livermore, Laurence and Vladimir A. Blagoderov and Roberts, David} } @article {10.3897/zookeys.137.1764, title = {Six new species of Acomoptera from North America (Diptera, Mycetophilidae)}, journal = {ZooKeys}, volume = {137}, year = {2011}, month = {10/2011}, pages = {41{\textendash}76}, publisher = {Pensoft Publishers}, abstract = {

Six new species are described, raising the number of North American Acomoptera species to seven and the genus total to ten, and nearly doubling the number of species within the putative clade containing Acomoptera, Drepanocercus, and Paratinia. These novel species forms have implications for the concept of Acomoptera that in turn, may impact our understanding of its generic relationships and the evolution and composition of Gnoristinae and Sciophilinae. The new species, A. crispa, A. digitata, A. echinosa, A. forculata, A. nelsoni, and A. vockerothi, are compared with the type species of the genus, A. plexipus (Garrett), whose diagnostic features are imaged and illustrated for the first time. The European species, A. difficilis (Dziedzicki) is also illustrated and compared. Acomoptera spinistyla (S\øli) comb. nov is transferred from Drepanocercus. A key to species is provided. Future work will seek to incorporate this knowledge into a systematic phylogenetic study of relationships between these species and their sister taxa.

}, doi = {10.3897/zookeys.137.1764}, url = {http://dx.doi.org/10.3897/zookeys.137.1764}, author = {Kerr, Peter} } @article {48292, title = {The genus Camptochaeta in Nearctic caves, with the description of C. prolixa sp. n. (Diptera, Sciaridae)}, journal = {ZooKeys}, volume = {135}, year = {2011}, pages = {69{\textendash}75}, keywords = {Camptochaeta, caves, Diptera, new records, new species, Sciaridae, USA}, doi = { 10.3897/zookeys.135.162}, url = {http://www.pensoft.net/journals/zookeys/article/1624/the-genus-camptochaeta-in-nearctic-caves-with-the-description-of-c-prolixa-sp-n-diptera-sciaridae-}, author = {Vilkamaa, Pekka and Hippa, Heikki and Steven J. Taylor} } @article {46727, title = {Baeopterogyna mihalyii Matile (Diptera, Mycetophilidae): association of sexes using morphological and molecular approaches with the first description of females}, journal = {ZooKeys}, volume = {114}, year = {2011}, pages = {15-27}, abstract = {Both males and females of Baeopterogyna mihalyii Matile, 1975 are recorded from northern Greece. Females are described for the first time providing photographs of the general facies and terminalia. In contrast to the single congener with stenopterous females {\textendash} B. nudipes Vockeroth, 1972 {\textendash} B. mihalyii is shown to have normally developed wings in both sexes. Association of sexes is based on both morphological characters and sequence data from cytochrome oxidase subunit one (COI). DNA sequences are used for the first time for the association of sexes in Mycetophilidae. New country record from Greece is provided for Sciophila nigronitida Landrock, 1925.}, keywords = {Baeopterogyna, COI, Diptera, Europe, Mycetophilidae, Systematics}, issn = {ISSN 1313-2970}, doi = {doi: 10.3897/zookeys.114.1364}, url = {http://www.pensoft.net/journals/zookeys/article/1364/baeopterogyna-mihalyii-matile-diptera-mycetophilidae-association-of-sexes-using-morphological-and-molecular-approaches-w}, author = {Kurina, Olavi and Erki {\~O}unap and Gordon Ramel} } @article {kurina_review_2011, title = {Review of the European Greenomyia Brunetti (Diptera, Mycetophilidae) with new descriptions of females}, journal = {ZooKeys}, volume = {77}, year = {2011}, pages = {31-50}, abstract = {The females of the four continental Greenomyia Brunetti species in Europe are associated with the males, diagnosed and keyed, providing the first association and description of the females of Greenomyia baikalica Zaitzev, 1994 and Greenomyia stackelbergi Zaitzev, 1982. Colour photographs of their habitus and line drawings of their female terminalia are provided. Greenomyia mongolica La{\v s}tovka \& Matile, 1974 is found to be a senior synonym of Greenomyia theresae Matile, 2002. syn. n. The diagnostic characters used to distinguish between Greenomyia and Neoclastobasis Ostroverkhova in keys did not hold up to a closer scrutiny and leave the status of Neoclastobasis as separate genus questionable.}, keywords = {Europe, fungus gnats, Greenomyia, identifi cation key, Mycetophilidae, Neoclastobasis, Synonymy, Systematics}, issn = {1313-2970}, doi = {10.3897/zookeys.77.936}, url = {http://www.pensoft.net/J_FILES/1/articles/936/936-G-1-layout.htm}, author = {Kurina, Olavi and Hedmark, Kjell and Karstr{\"o}m, Mats and Kj{\ae}randsen, Jostein} } @article {su-jiong_zhang_genus_2010, title = {The genus Keilbachia Mohrig from Mainland China, with descriptions of two new species (Diptera, Sciaridae)}, journal = {ZooKeys}, volume = {52}, year = {2010}, pages = {47-56}, abstract = {Seven species of Keilbachia Mohrig are recognized, and among them, two new species, K. subacumina Wu \& Zhang, sp. n. and K. fengyangensis Wu \& Zhang, sp. n. are described and illustrated. Five species, K. orthonema , K. flagrispina , K. demssia , K. oligonema and K. acumina are reported for the first time from China. A key to the 15 Chinese species of this genus is also provided.}, keywords = {Diptera, Keibachia, Mainland China, new species, Sciaridae}, doi = {10.3897/zookeys.52.362}, author = {Zhang, Su-Jiong and Huang, Junhao and Wu, Hong and Wang, Yi-Ping} } @article {44530, title = {Parisognoriste, a new genus of Lygistorrhinidae (Diptera: Sciaroidea) from the Oise amber with redescription of Palaeognoriste Meunier}, journal = {ZooKeys}, volume = {50}, year = {2010}, month = {30/06/2010}, pages = {79-90}, abstract = {A new genus and a new species of Lygistorrhinidae, Parisognoriste eocenica is described from the Eocene Oise amber of the Paris Basin. Palaeognoriste sciariforme Meunier, 1904 and Palaeognoriste affine Meunier, 1912 are re-described. Lectotypes are designated for both species of Palaeognoriste. The phylogenetic positions of the new genus and Palaeognoriste Meunier are discussed. The paper is an example demonstrating a new approach in cybertaxonomy including automatic generation of manuscript within Virtual Research Environment (Scratchpads), semantic enhancements, and parallel release of the publication on paper and on-line accompanied with registration of new taxa with ZooBank.}, keywords = {Eocene, fossil resin, New taxa, phylogeny, Taxonomy}, doi = {10.3897/zookeys.50.506}, url = {http://pensoftonline.net/zookeys/index.php/journal/article/view/506/472}, author = {Vladimir A. Blagoderov and Hippa, Heikki and Nel, A.} } @article {44529, title = {Semantic tagging of and semantic enhancements to systematics papers: ZooKeys working examples}, journal = {ZooKeys}, volume = {50}, year = {2010}, month = {30/06/2010}, pages = {1-16}, abstract = {Th e concept of semantic tagging and its potential for semantic enhancements to taxonomic papers is outlined and illustrated by four exemplar papers published in the present issue of ZooKeys. The four papers were created in different ways: (i) written in Microsoft Word and submitted as non-tagged manuscript (doi: 10.3897/zookeys.50.504); (ii) generated from Scratchpads and submitted as XMLtagged manuscripts (doi: 10.3897/zookeys.50.505 and doi: 10.3897/zookeys.50.506); (iii) generated from an author{\textquoteright}s database (doi: 10.3897/zookeys.50.485) and submitted as XML-tagged manuscript. XML tagging and semantic enhancements were implemented during the editorial process of ZooKeys using the Pensoft Mark Up Tool (PMT), specially designed for this purpose. The XML schema used was TaxPub, an extension to the Document Type Definitions (DTD) of the US National Library of Medicine Journal Archiving and Interchange Tag Suite (NLM). The following innovative methods of tagging, layout, publishing and disseminating the content were tested and implemented within the ZooKeys editorial workflow: (1) highly automated, fine-grained XML tagging based on TaxPub; (2) final XML output of the paper validated against the NLM DTD for archiving in PubMedCentral; (3) bibliographic metadata embedded in the PDF through XMP (Extensible Metadata Platform); (4) PDF uploaded after publication to the Biodiversity Heritage Library (BHL); (5) taxon treatments supplied through XML to Plazi; (6) semantically enhanced HTML version of the paper encompassing numerous internal and external links and linkouts, such as: (i) vizualisation of main tag elements within the text (e.g., taxon names, taxon treatments, localities, etc.); (ii) internal cross-linking between paper sections, citations, references, tables, and figures; (iii) mapping of localities listed in the whole paper or within separate taxon treatments; (v) taxon names autotagged, dynamically mapped and linked through the Pensoft Taxon Profile (PTP) to large international database services and indexers such as Global Biodiversity Information Facility (GBIF), National Center for Biotechnology Information (NCBI), Barcode of Life (BOLD), Encyclopedia of Life (EOL), ZooBank, Wikipedia, Wikispecies, Wikimedia, and others; (vi) GenBank accession numbers autotagged and linked to NCBI; (vii) external links of taxon names to references in PubMed, Google Scholar, Biodiversity Heritage Library and other sources. With the launching of the working example, ZooKeys becomes the first taxonomic journal to provide a complete XML-based editorial, publication and dissemination workfl ow implemented as a routine and cost-efficient practice. It is anticipated that XML-based workflow will also soon be implemented in botany through PhytoKeys, a forthcoming partner journal of ZooKeys. The semantic markup and enhancements are expected to greatly extend and accelerate the way taxonomic information is published, disseminated and used.}, keywords = {semantic enhancements, Semantic tagging, Systematics, Taxonomy}, doi = {10.3897/zookeys.50.538}, url = {http://pensoftonline.net/zookeys/index.php/journal/article/view/538/474}, author = {Penev, Lyubomir and Agosti, Donat and Georgiev, Teodor and Catapano, Terrence and Miller, Jeremy and Vladimir A. Blagoderov and Roberts, David and Smith, Vincent and Brake, Irina and Rycroft, Simon and Scott, Ben and Johnson, Norman F. and Morris, Robert A. and Sautter, Guido and Chavan, Vishwas and Robertson, Tim and Remsen, David and Stoev, Pavel and Parr, Cynthia and Knapp, Sandra and Kress, W. John and Thompson, F. Christian and Erwin, Terry} } @article {44492, title = {Streamlining taxonomic publication: a working example with Scratchpads and ZooKeys}, journal = {ZooKeys}, volume = {50}, year = {2010}, month = {30/06/2010}, pages = {17-28}, abstract = {We describe a method to publish nomenclatural acts described in taxonomic websites (Scratchpads) that are formally registered through publication in a printed journal (ZooKeys). This method is fully compliant with the zoological nomenclatural code. Our approach supports manuscript creation (via a Scratchpad), electronic act registration (via ZooBank), online and print publication (in the journal ZooKeys) and simultaneous dissemination (ZooKeys and Scratchpads) for nomenclatorial acts including new species descriptions. The workflow supports the generation of manuscripts directly from a database and is illustrated by two sample papers published in the present issue.}, keywords = {ICBN, ICZN, Nomenclature, Online publishing, Taxonomy}, doi = {10.3897/zookeys.50.539}, url = {http://pensoftonline.net/zookeys/index.php/journal/article/view/539/473}, author = {Vladimir A. Blagoderov and Brake, Irina and Georgiev, Teodor and Penev, Lyubomir and Roberts, Dave and Rycroft, Simon and Scott, Ben and Agosti, Donat and Catapano, Terrence and Smith, Vincent} }